Variant report

Variant	rs6803936
Chromosome Location	chr3:150335063-150335064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150334636..150336342-chr3:150338570..150340456,2	K562	blood:
2	chr3:150329632..150332153-chr3:150333986..150336018,2	K562	blood:
3	chr3:150334552..150337419-chr3:150354020..150357291,3	K562	blood:
4	chr3:150334750..150337026-chr3:150339148..150342071,3	MCF-7	breast:
5	chr3:150334636..150336342-chr3:150338385..150340456,3	K562	blood:
6	chr3:150333970..150336900-chr3:150340631..150342625,3	K562	blood:
7	chr3:150333970..150337663-chr3:150340631..150342414,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000271711	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6798417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006995	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150322200-150336400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:150322200-150347000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:150322400-150336200	Weak transcription	Fetal Kidney	kidney
4	chr3:150322400-150344000	Weak transcription	HSMMtube	muscle
5	chr3:150322400-150350800	Weak transcription	Colonic Mucosa	Colon
6	chr3:150322400-150353000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:150322800-150341200	Weak transcription	HSMM	muscle
8	chr3:150323000-150341200	Weak transcription	Adipose Nuclei	Adipose
9	chr3:150323000-150343800	Weak transcription	HMEC	breast
10	chr3:150323000-150348200	Weak transcription	Fetal Brain Male	brain
11	chr3:150323000-150348200	Weak transcription	Fetal Lung	lung
12	chr3:150323800-150341000	Weak transcription	A549	lung
13	chr3:150324000-150341600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:150324200-150336000	Weak transcription	Osteobl	bone
15	chr3:150324200-150342400	Weak transcription	NHDF-Ad	bronchial
16	chr3:150324600-150339000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:150325600-150336800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:150325600-150339400	Weak transcription	Hela-S3	cervix
19	chr3:150325600-150342400	Weak transcription	NHLF	lung
20	chr3:150325600-150342600	Weak transcription	Brain Substantia Nigra	brain
21	chr3:150325600-150348400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:150325800-150336600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:150325800-150342400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr3:150325800-150344200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:150326000-150343800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:150326000-150348400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:150326000-150352800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr3:150326400-150339400	Weak transcription	HepG2	liver
29	chr3:150326600-150343800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr3:150326800-150343000	Weak transcription	Brain Hippocampus Middle	brain
31	chr3:150326800-150344200	Weak transcription	Fetal Brain Female	brain
32	chr3:150327400-150336400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:150327400-150343200	Weak transcription	Left Ventricle	heart
34	chr3:150327600-150343800	Weak transcription	Small Intestine	intestine
35	chr3:150328200-150343800	Weak transcription	Aorta	Aorta
36	chr3:150328600-150344200	Weak transcription	Fetal Heart	heart
37	chr3:150328800-150338600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr3:150328800-150340200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr3:150328800-150340600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:150328800-150340800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:150328800-150342600	Weak transcription	Liver	Liver
42	chr3:150328800-150343000	Weak transcription	Brain Anterior Caudate	brain
43	chr3:150328800-150343600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr3:150328800-150343800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:150329200-150341600	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr3:150329800-150343600	Weak transcription	Pancreas	Pancrea
47	chr3:150329800-150344200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr3:150330000-150336000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:150330000-150342800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:150330000-150343000	Weak transcription	Thymus	Thymus

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