Variant report

Variant	rs68042320
Chromosome Location	chr14:32946551-32946552
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32941433..32942936-chr14:32946433..32948525,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3784199	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4981971	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs721538	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv901595	chr14:32928634-32961434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32938000-32947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:32942000-32946600	Weak transcription	Esophagus	oesophagus
3	chr14:32942000-32947200	Weak transcription	Right Atrium	heart
4	chr14:32942400-32946600	Weak transcription	Fetal Brain Female	brain
5	chr14:32943000-32947000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:32943000-32947000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:32943200-32947200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:32943200-32947200	Weak transcription	Osteobl	bone
9	chr14:32943200-32947400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:32943200-32950800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:32943600-32946600	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:32943600-32947000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:32943600-32947000	Weak transcription	NHLF	lung
14	chr14:32943600-32947200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:32943600-32947200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:32944200-32948000	Enhancers	Brain Hippocampus Middle	brain
17	chr14:32944600-32947000	Weak transcription	HSMM	muscle
18	chr14:32944600-32947000	Weak transcription	HSMMtube	muscle
19	chr14:32944800-32946600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:32944800-32946800	Weak transcription	HMEC	breast
21	chr14:32944800-32947200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:32945400-32947800	Enhancers	Brain Cingulate Gyrus	brain
23	chr14:32945400-32948200	Enhancers	Brain Substantia Nigra	brain
24	chr14:32945600-32946800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:32945600-32947800	Enhancers	Rectal Smooth Muscle	rectum
26	chr14:32945600-32948000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr14:32945600-32948000	Enhancers	Colon Smooth Muscle	Colon
28	chr14:32945600-32948200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr14:32945800-32946600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:32945800-32946600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr14:32945800-32947600	Enhancers	Fetal Heart	heart
32	chr14:32945800-32947600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr14:32945800-32947600	Enhancers	Stomach Smooth Muscle	stomach
34	chr14:32945800-32947800	Enhancers	Brain Anterior Caudate	brain
35	chr14:32945800-32948200	Enhancers	Brain Angular Gyrus	brain
36	chr14:32945800-32950200	Enhancers	NHDF-Ad	bronchial
37	chr14:32946000-32946800	Enhancers	Right Ventricle	heart
38	chr14:32946000-32947600	Enhancers	Left Ventricle	heart
39	chr14:32946200-32946600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:32946200-32948200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:32946400-32947800	Enhancers	Fetal Brain Male	brain
42	chr14:32946400-32948000	Enhancers	Aorta	Aorta
43	chr14:32946400-32948200	Enhancers	NHEK	skin

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