Variant report

Variant	rs6804292
Chromosome Location	chr3:156849551-156849552
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156848498..156851635-chr3:156855250..156858331,3	K562	blood:
2	chr3:156834875..156837261-chr3:156848856..156851767,2	K562	blood:
3	chr3:156848000..156849785-chr3:156874764..156877211,2	K562	blood:
4	chr3:156843888..156849892-chr3:156876155..156879435,6	MCF-7	breast:
5	chr3:156847773..156850327-chr3:156876742..156880332,3	K562	blood:
6	chr3:156848414..156850096-chr3:156851062..156854177,4	K562	blood:
7	chr3:156838068..156840921-chr3:156849231..156851530,2	K562	blood:
8	chr3:156847271..156850096-chr3:156851185..156855376,4	K562	blood:
9	chr3:156805163..156809241-chr3:156846112..156851758,6	K562	blood:
10	chr3:156805135..156808634-chr3:156846380..156850000,4	MCF-7	breast:
11	chr3:156391690..156393986-chr3:156846773..156851627,7	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNL1-3	chr3:156849515-156850165	NONHSAT092887

No data

Variant related genes	Relation type
ENSG00000241135	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000243629	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16827244	0.87[ASN][1000 genomes]
rs7624327	0.89[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7646102	0.89[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156837000-156850400	Enhancers	Fetal Intestine Small	intestine
2	chr3:156838400-156851400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:156842400-156850200	Enhancers	Fetal Intestine Large	intestine
4	chr3:156842400-156851600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:156842400-156855600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:156842600-156852600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:156843000-156855600	Enhancers	Osteobl	bone
8	chr3:156844600-156849800	Enhancers	Fetal Thymus	thymus
9	chr3:156844600-156851000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:156845200-156850200	Enhancers	NHLF	lung
11	chr3:156845200-156851400	Enhancers	HSMMtube	muscle
12	chr3:156845400-156849600	Enhancers	GM12878-XiMat	blood
13	chr3:156845400-156855600	Enhancers	NHDF-Ad	bronchial
14	chr3:156845600-156854800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:156845600-156855600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:156845800-156849800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr3:156845800-156851000	Enhancers	HUVEC	blood vessel
18	chr3:156846000-156849600	Enhancers	Spleen	Spleen
19	chr3:156846000-156850000	Enhancers	Primary T cells from cord blood	blood
20	chr3:156846000-156852800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:156846200-156849800	Enhancers	NHEK	skin
22	chr3:156846400-156851200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:156846800-156849600	Enhancers	Fetal Lung	lung
24	chr3:156846800-156850200	Weak transcription	Aorta	Aorta
25	chr3:156846800-156851400	Enhancers	NH-A	brain
26	chr3:156846800-156855000	Weak transcription	Fetal Kidney	kidney
27	chr3:156847000-156855400	Enhancers	Fetal Heart	heart
28	chr3:156847200-156852400	Weak transcription	Ovary	ovary
29	chr3:156847800-156850400	Enhancers	Small Intestine	intestine
30	chr3:156848000-156850800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr3:156848000-156853000	Enhancers	Psoas Muscle	Psoas
32	chr3:156848200-156851600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr3:156848200-156855600	Enhancers	HMEC	breast
34	chr3:156848400-156850200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr3:156848400-156850200	Enhancers	Colonic Mucosa	Colon
36	chr3:156848400-156850600	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr3:156848400-156851000	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr3:156848400-156853800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr3:156848400-156855600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:156848400-156855600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:156848400-156866000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:156848400-156866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr3:156848600-156849600	Enhancers	Muscle Satellite Cultured Cells	--
44	chr3:156848600-156850200	Enhancers	Stomach Mucosa	stomach
45	chr3:156848600-156852400	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr3:156848600-156852600	Enhancers	Brain Angular Gyrus	brain
47	chr3:156848600-156852800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:156848600-156853600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:156848600-156853800	Weak transcription	Fetal Brain Female	brain
50	chr3:156848600-156854600	Enhancers	Brain Anterior Caudate	brain

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