Variant report

Variant	rs6804568
Chromosome Location	chr3:99619802-99619803
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99618971..99621795-chr3:99720299..99722726,2	MCF-7	breast:
2	chr3:99613503..99616492-chr3:99619175..99621373,2	K562	blood:
3	chr3:99617788..99620536-chr3:99977844..99981693,3	MCF-7	breast:
4	chr3:99616272..99618855-chr3:99619104..99622005,3	MCF-7	breast:
5	chr3:99593530..99595293-chr3:99619063..99620601,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168386	Chromatin interaction
ENSG00000036054	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17314998	1.00[AFR][1000 genomes]
rs17584271	1.00[AFR][1000 genomes]
rs6785776	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99600800-99638600	Weak transcription	Left Ventricle	heart
2	chr3:99604600-99648200	Weak transcription	Primary T cells from cord blood	blood
3	chr3:99615200-99620600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:99615400-99620200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:99616000-99620200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:99616000-99620400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:99616000-99631200	Weak transcription	Primary B cells from cord blood	blood
8	chr3:99616600-99622800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:99617200-99623200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:99618400-99621000	Enhancers	Adipose Nuclei	Adipose
11	chr3:99618600-99620200	Enhancers	HMEC	breast
12	chr3:99619000-99621200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:99619200-99620200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:99619200-99620400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:99619200-99621400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr3:99619200-99621600	Enhancers	NHLF	lung
17	chr3:99619400-99620000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:99619400-99620000	Enhancers	Brain Substantia Nigra	brain
19	chr3:99619400-99620200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:99619400-99620200	Enhancers	NH-A	brain
21	chr3:99619400-99620400	Enhancers	Brain Germinal Matrix	brain
22	chr3:99619400-99620400	Enhancers	Osteobl	bone
23	chr3:99619400-99621200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:99619400-99621200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:99619400-99621200	Enhancers	Fetal Lung	lung
26	chr3:99619400-99621400	Enhancers	Brain Hippocampus Middle	brain
27	chr3:99619400-99621400	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr3:99619400-99621400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr3:99619400-99621600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr3:99619400-99623000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:99619600-99620000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:99619600-99620000	Enhancers	Small Intestine	intestine
33	chr3:99619600-99620000	Enhancers	Stomach Smooth Muscle	stomach
34	chr3:99619600-99620000	Flanking Active TSS	Hela-S3	cervix
35	chr3:99619600-99620200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:99619600-99620200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:99619600-99620200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:99619600-99620200	Enhancers	Brain Anterior Caudate	brain
39	chr3:99619600-99620200	Enhancers	Right Atrium	heart
40	chr3:99619600-99620400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:99619600-99620400	Enhancers	HSMM	muscle
42	chr3:99619600-99620600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr3:99619600-99620800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr3:99619600-99620800	Enhancers	Duodenum Mucosa	Duodenum
45	chr3:99619600-99620800	Enhancers	Fetal Intestine Large	intestine
46	chr3:99619600-99621200	Enhancers	HSMMtube	muscle
47	chr3:99619600-99621400	Enhancers	Liver	Liver
48	chr3:99619600-99621400	Enhancers	Fetal Intestine Small	intestine
49	chr3:99619600-99621400	Enhancers	Stomach Mucosa	stomach
50	chr3:99619600-99621600	Flanking Active TSS	NHEK	skin

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