Variant report

Variant	rs6804769
Chromosome Location	chr3:151064016-151064017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151063727..151066442-chr3:151089515..151092440,2	K562	blood:
2	chr3:151039875..151042217-chr3:151061873..151064664,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10513391	0.82[CEU][hapmap]
rs10935831	0.82[CEU][hapmap]
rs10935832	0.86[CEU][hapmap]
rs10935833	0.82[CEU][hapmap]
rs10935835	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs10935839	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11925037	0.87[CEU][hapmap]
rs11926145	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs12107539	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs12497019	0.87[CEU][hapmap];0.83[TSI][hapmap]
rs12497330	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12637988	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs13095610	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16863287	0.82[CEU][hapmap]
rs2307020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3732759	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3732760	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3773621	0.87[CEU][hapmap]
rs4680307	0.87[CEU][hapmap]
rs4680356	0.87[CEU][hapmap];0.81[TSI][hapmap]
rs6440737	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6440738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6767192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784934	0.87[CEU][hapmap]
rs6785930	0.87[CEU][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs6790448	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6793898	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6801273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7428575	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7641645	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7644001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7648875	0.87[CEU][hapmap]
rs7653603	0.84[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151059400-151064200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:151063200-151066000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr3:151063200-151067200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr3:151063600-151064200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
5	chr3:151063600-151064200	Active TSS	Brain Anterior Caudate	brain
6	chr3:151063600-151064200	Active TSS	Colon Smooth Muscle	Colon
7	chr3:151063600-151064200	Active TSS	Right Atrium	heart
8	chr3:151063600-151064400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:151063600-151064400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:151063600-151064400	Active TSS	Fetal Lung	lung
11	chr3:151063600-151064400	Enhancers	NHLF	lung
12	chr3:151063600-151064600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:151063600-151064600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:151063600-151065000	Active TSS	Primary B cells from cord blood	blood
15	chr3:151063800-151064200	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr3:151063800-151064200	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:151063800-151065800	Weak transcription	Brain Angular Gyrus	brain
18	chr3:151063800-151066800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:151063800-151099800	Weak transcription	Fetal Intestine Small	intestine
20	chr3:151064000-151064200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:151064000-151064200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:151064000-151064200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr3:151064000-151064200	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:151064000-151064200	Flanking Active TSS	NHDF-Ad	bronchial
25	chr3:151064000-151064400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:151064000-151064400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:151064000-151064400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:151064000-151064600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:151064000-151064600	Enhancers	Adipose Nuclei	Adipose
30	chr3:151064000-151065600	Weak transcription	Brain Hippocampus Middle	brain

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