Variant report

Variant	rs6805510
Chromosome Location	chr3:94965472-94965473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:43976463..43979311-chr3:94964978..94967829,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12489010	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1400294	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1516588	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2310404	1.00[AMR][1000 genomes]
rs4431111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4580554	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs484543	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4857158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs504450	1.00[AMR][1000 genomes]
rs507696	1.00[AMR][1000 genomes]
rs517952	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs544112	1.00[AMR][1000 genomes]
rs547704	1.00[AMR][1000 genomes]
rs558349	1.00[AMR][1000 genomes]
rs6437746	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6771121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6777611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6785501	1.00[AMR][1000 genomes]
rs6790242	1.00[AMR][1000 genomes]
rs6802883	1.00[AMR][1000 genomes]
rs9878411	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv877174	chr3:94867122-94983900	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv2754985	chr3:94868320-94970627	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv877175	chr3:94869561-95210873	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1011235	chr3:94870789-95238299	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2752668	chr3:94887527-94967365	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	esv2755718	chr3:94887527-94970627	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	esv2754322	chr3:94913312-94967365	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv428091	chr3:94942642-95393754	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv428744	chr3:94960533-95145238	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94961200-94970400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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