Variant report

Variant	rs6805954
Chromosome Location	chr3:156821818-156821819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156816993..156818537-chr3:156821537..156823684,2	K562	blood:
2	chr3:156807801..156810830-chr3:156820273..156823963,3	K562	blood:
3	chr3:156820330..156823175-chr3:156828764..156831277,2	K562	blood:
4	chr3:156818183..156821889-chr3:156836594..156840087,4	K562	blood:
5	chr3:156805423..156808063-chr3:156820673..156822516,2	MCF-7	breast:
6	chr3:156819177..156820973-chr3:156821393..156823022,2	MCF-7	breast:
7	chr3:156820447..156822637-chr3:156825725..156827377,2	K562	blood:
8	chr3:156813189..156821079-chr3:156821537..156824673,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000241135	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6793284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156807800-156822000	Weak transcription	Aorta	Aorta
2	chr3:156810600-156832000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:156811000-156823000	Weak transcription	Spleen	Spleen
4	chr3:156813200-156838000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:156817800-156825600	Weak transcription	Colonic Mucosa	Colon
6	chr3:156817800-156828600	Weak transcription	Pancreas	Pancrea
7	chr3:156818200-156822000	Weak transcription	HSMM	muscle
8	chr3:156818600-156822000	Weak transcription	NHLF	lung
9	chr3:156818600-156828800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:156819000-156825400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:156819200-156822400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:156819200-156827600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:156819600-156846400	Weak transcription	Fetal Kidney	kidney
14	chr3:156820800-156824000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr3:156820800-156824200	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:156821000-156822000	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:156821000-156822200	Flanking Active TSS	GM12878-XiMat	blood
18	chr3:156821000-156822400	Enhancers	Right Atrium	heart
19	chr3:156821000-156823000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:156821000-156823000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:156821000-156823000	Enhancers	K562	blood
22	chr3:156821000-156823200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:156821000-156823200	Enhancers	Ovary	ovary
24	chr3:156821000-156823400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr3:156821000-156823400	Enhancers	Left Ventricle	heart
26	chr3:156821000-156823600	Enhancers	HepG2	liver
27	chr3:156821000-156823800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:156821000-156823800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:156821000-156826000	Enhancers	Fetal Heart	heart
30	chr3:156821200-156822000	Enhancers	Brain Hippocampus Middle	brain
31	chr3:156821200-156822000	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr3:156821200-156822000	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr3:156821200-156822200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:156821200-156822200	Enhancers	Primary B cells from cord blood	blood
35	chr3:156821200-156822600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:156821200-156822600	Enhancers	HSMMtube	muscle
37	chr3:156821200-156822800	Enhancers	NHDF-Ad	bronchial
38	chr3:156821200-156823000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:156821200-156823000	Enhancers	Duodenum Mucosa	Duodenum
40	chr3:156821200-156823200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:156821200-156823600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:156821200-156823600	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr3:156821400-156822200	Enhancers	Fetal Intestine Small	intestine
44	chr3:156821400-156822800	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr3:156821400-156823000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:156821400-156823000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:156821400-156823000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:156821400-156823200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:156821400-156823400	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr3:156821400-156823800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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