Variant report

Variant	rs6806239
Chromosome Location	chr3:70488207-70488208
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10510999	0.82[EUR][1000 genomes]
rs11705704	0.81[EUR][1000 genomes]
rs11721315	0.81[EUR][1000 genomes]
rs12486347	0.81[EUR][1000 genomes]
rs12494424	0.82[ASN][1000 genomes]
rs12495414	0.81[EUR][1000 genomes]
rs12496319	0.81[EUR][1000 genomes]
rs17790917	0.81[EUR][1000 genomes]
rs4302353	1.00[ASN][1000 genomes]
rs4974294	0.83[EUR][1000 genomes]
rs4974296	0.81[EUR][1000 genomes]
rs55985770	0.81[EUR][1000 genomes]
rs59478663	0.82[EUR][1000 genomes]
rs61604727	0.82[EUR][1000 genomes]
rs6791507	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9882304	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv3867	chr3:70480358-70525397	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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