Variant report

Variant	rs6807177
Chromosome Location	chr3:56737646-56737647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1387713	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565376	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1565377	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1844477	0.82[ASN][1000 genomes]
rs2317246	0.82[AMR][1000 genomes]
rs2317248	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821413	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs4273342	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4407379	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4455300	0.87[EUR][1000 genomes]
rs4634082	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681763	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4681765	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4681767	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6445815	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445820	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6772854	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6773823	0.84[ASN][1000 genomes]
rs6773931	0.84[ASN][1000 genomes]
rs6805910	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628922	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7629016	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857253	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv237149	chr3:56732922-56738481	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6807177	ARHGEF3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56729800-56738600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:56730000-56738600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:56730400-56738600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:56731200-56738600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:56731200-56738600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:56731200-56738600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:56733400-56738600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:56734800-56756400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:56736400-56739400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:56736400-56740000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:56737000-56738800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:56737200-56738400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:56737200-56738600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:56737200-56738600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr3:56737200-56738600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr3:56737200-56738600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:56737200-56738600	Weak transcription	Dnd41	blood

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