Variant report

Variant	rs6807235
Chromosome Location	chr3:156341601-156341602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11711144	0.99[ASN][1000 genomes]
rs12489699	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493167	0.83[AMR][1000 genomes]
rs12631936	0.86[ASN][1000 genomes]
rs13090418	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2089735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102506	0.87[ASN][1000 genomes]
rs6762513	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762762	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7632294	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9811767	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9819659	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833654	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877684	chr3:156294987-156344825	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156336400-156345800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:156338400-156343400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:156338800-156343600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:156338800-156345800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:156339000-156343400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:156339000-156343600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:156339000-156343800	Weak transcription	K562	blood
8	chr3:156339200-156343600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:156339200-156343600	Weak transcription	HMEC	breast
10	chr3:156339200-156343600	Weak transcription	NHEK	skin
11	chr3:156339200-156343800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:156339200-156346000	Weak transcription	HSMM	muscle
13	chr3:156339200-156347800	Weak transcription	Esophagus	oesophagus
14	chr3:156339600-156343400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:156341200-156342000	Enhancers	Lung	lung
16	chr3:156341200-156343600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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