Variant report

Variant	rs6807733
Chromosome Location	chr3:47577748-47577749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1038392	0.83[YRI][hapmap]
rs17079693	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6810322	0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72913126	0.80[AMR][1000 genomes]
rs72916824	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72916833	0.87[AFR][1000 genomes]
rs72916838	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834333	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	esv33034	chr3:47565429-47578605	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47576800-47579800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:47577000-47578200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:47577000-47583000	Weak transcription	K562	blood
4	chr3:47577400-47578800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:47577600-47577800	Enhancers	Brain Hippocampus Middle	brain
6	chr3:47577600-47577800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr3:47577600-47578000	Enhancers	Brain Cingulate Gyrus	brain
8	chr3:47577600-47578000	Enhancers	Brain Germinal Matrix	brain
9	chr3:47577600-47578200	Active TSS	Brain Anterior Caudate	brain
10	chr3:47577600-47578600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:47577600-47578600	Enhancers	Brain Angular Gyrus	brain
12	chr3:47577600-47578600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:47577600-47578800	Enhancers	Brain Substantia Nigra	brain
14	chr3:47577600-47579200	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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