Variant report

Variant	rs68078546
Chromosome Location	chr1:158432167-158432168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1119029	0.80[ASN][1000 genomes]
rs12118413	0.82[ASN][1000 genomes]
rs12119297	0.80[ASN][1000 genomes]
rs12122595	0.82[ASN][1000 genomes]
rs12125990	0.82[ASN][1000 genomes]
rs12127971	0.82[ASN][1000 genomes]
rs12133777	0.80[ASN][1000 genomes]
rs12134692	0.80[ASN][1000 genomes]
rs12136746	0.80[ASN][1000 genomes]
rs12136971	0.80[ASN][1000 genomes]
rs12139611	0.80[ASN][1000 genomes]
rs12141446	0.80[ASN][1000 genomes]
rs12141449	0.80[ASN][1000 genomes]
rs12142715	0.82[ASN][1000 genomes]
rs12144696	0.80[ASN][1000 genomes]
rs12145637	0.80[ASN][1000 genomes]
rs12728815	0.82[ASN][1000 genomes]
rs12729052	0.82[ASN][1000 genomes]
rs12744495	0.82[ASN][1000 genomes]
rs13375849	0.80[ASN][1000 genomes]
rs13376086	0.82[ASN][1000 genomes]
rs1342937	0.80[ASN][1000 genomes]
rs1342938	0.80[ASN][1000 genomes]
rs1342939	0.80[ASN][1000 genomes]
rs1342940	0.80[ASN][1000 genomes]
rs1342941	0.81[ASN][1000 genomes]
rs1342942	0.81[ASN][1000 genomes]
rs1388267	0.82[ASN][1000 genomes]
rs1418841	0.80[ASN][1000 genomes]
rs1546064	0.80[ASN][1000 genomes]
rs1578759	0.80[ASN][1000 genomes]
rs1578760	0.80[ASN][1000 genomes]
rs17628749	0.82[ASN][1000 genomes]
rs1907467	0.80[ASN][1000 genomes]
rs2201059	0.80[ASN][1000 genomes]
rs2213946	0.82[ASN][1000 genomes]
rs2220630	0.82[ASN][1000 genomes]
rs34246317	0.82[ASN][1000 genomes]
rs34443037	0.81[ASN][1000 genomes]
rs34959155	0.82[ASN][1000 genomes]
rs35053382	0.82[ASN][1000 genomes]
rs35358362	0.82[ASN][1000 genomes]
rs35504011	0.82[ASN][1000 genomes]
rs35963645	0.82[ASN][1000 genomes]
rs4628505	0.80[ASN][1000 genomes]
rs4644490	0.80[ASN][1000 genomes]
rs56125590	0.82[ASN][1000 genomes]
rs56937999	0.82[ASN][1000 genomes]
rs57472964	0.80[ASN][1000 genomes]
rs59524892	0.82[ASN][1000 genomes]
rs60351230	0.80[ASN][1000 genomes]
rs61034754	0.80[ASN][1000 genomes]
rs6427437	0.82[ASN][1000 genomes]
rs6660236	0.80[ASN][1000 genomes]
rs6672590	0.80[ASN][1000 genomes]
rs6675399	0.80[ASN][1000 genomes]
rs6692530	0.82[ASN][1000 genomes]
rs66946798	0.80[ASN][1000 genomes]
rs6699757	0.82[ASN][1000 genomes]
rs67317531	0.82[ASN][1000 genomes]
rs71632619	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7418542	0.81[ASN][1000 genomes]
rs7540866	0.80[ASN][1000 genomes]
rs961562	0.82[ASN][1000 genomes]
rs977384	0.82[ASN][1000 genomes]
rs989203	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv947133	chr1:158431706-158440282	Strong transcription Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158431800-158435400	Weak transcription	Thymus	Thymus
2	chr1:158431800-158443200	Weak transcription	Fetal Thymus	thymus

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