Variant report

Variant	rs6807857
Chromosome Location	chr3:139557781-139557782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1349000	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374825	0.82[MEX][hapmap];0.83[YRI][hapmap]
rs1374829	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1374832	0.82[MEX][hapmap];0.91[TSI][hapmap]
rs1447722	0.86[MEX][hapmap]
rs1447725	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1868170	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35869591	0.85[ASN][1000 genomes]
rs4452287	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683763	0.82[AMR][1000 genomes]
rs59160792	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841018	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv530058	chr3:139243971-139814419	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139553200-139558800	Enhancers	Pancreas	Pancrea
2	chr3:139554600-139558800	Enhancers	Fetal Brain Male	brain
3	chr3:139555000-139558000	Enhancers	Psoas Muscle	Psoas
4	chr3:139556000-139559000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr3:139556400-139559000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr3:139556800-139558000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:139557000-139557800	Weak transcription	Fetal Brain Female	brain
8	chr3:139557000-139558000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:139557000-139558000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:139557000-139558000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:139557000-139558000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:139557000-139558400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:139557200-139557800	Enhancers	Ovary	ovary
14	chr3:139557200-139558000	Enhancers	Liver	Liver
15	chr3:139557200-139558200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:139557200-139558600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:139557400-139557800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr3:139557400-139558000	Enhancers	Right Atrium	heart
19	chr3:139557400-139559000	Enhancers	Adipose Nuclei	Adipose
20	chr3:139557600-139557800	Enhancers	Fetal Muscle Leg	muscle

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