Variant report

Variant	rs68086041
Chromosome Location	chr21:40524875-40524876
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:40524814..40527539-chr21:40530496..40533251,3	K562	blood:
2	chr21:40515045..40517446-chr21:40522211..40524876,3	MCF-7	breast:
3	chr21:40068512..40071078-chr21:40523765..40525583,2	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10154057	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1041439	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11702268	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11910971	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13050247	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13050584	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13051430	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1541100	0.87[EUR][1000 genomes]
rs1541101	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1984748	0.85[EUR][1000 genomes]
rs2026266	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2142111	0.80[ASN][1000 genomes]
rs2142117	0.87[EUR][1000 genomes]
rs2150410	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2150412	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2183574	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2183575	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2183576	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2225425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2236437	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2245455	0.81[ASN][1000 genomes]
rs2272576	0.82[EUR][1000 genomes]
rs2272577	0.82[EUR][1000 genomes]
rs2272578	0.82[EUR][1000 genomes]
rs2297258	0.82[EUR][1000 genomes]
rs2410104	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2410121	0.87[EUR][1000 genomes]
rs28399794	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs371625	0.81[ASN][1000 genomes]
rs383967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs391062	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs413078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs414850	0.81[ASN][1000 genomes]
rs418298	0.81[ASN][1000 genomes]
rs418359	0.81[ASN][1000 genomes]
rs419469	0.81[ASN][1000 genomes]
rs425988	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs428602	0.81[ASN][1000 genomes]
rs429955	0.81[ASN][1000 genomes]
rs442972	0.81[ASN][1000 genomes]
rs444130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs452377	0.81[ASN][1000 genomes]
rs452776	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4816619	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4816623	0.81[EUR][1000 genomes]
rs4818004	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4818006	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4818007	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4818011	0.87[EUR][1000 genomes]
rs4818012	0.87[EUR][1000 genomes]
rs55885019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56151678	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6517520	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6517524	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6517525	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6517529	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6517530	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6517531	0.87[EUR][1000 genomes]
rs6517532	0.87[EUR][1000 genomes]
rs6517534	0.81[EUR][1000 genomes]
rs6517536	0.87[EUR][1000 genomes]
rs6517537	0.84[EUR][1000 genomes]
rs6517539	0.87[EUR][1000 genomes]
rs6517540	0.82[EUR][1000 genomes]
rs6517541	0.82[EUR][1000 genomes]
rs6650847	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66519408	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66746936	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67212994	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67382266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67649754	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68069991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68114370	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs718225	0.87[EUR][1000 genomes]
rs7275773	0.87[EUR][1000 genomes]
rs7276559	0.87[EUR][1000 genomes]
rs7276698	0.87[EUR][1000 genomes]
rs7280149	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7282029	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7282604	0.81[ASN][1000 genomes]
rs7282724	0.87[EUR][1000 genomes]
rs7282947	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7283439	0.85[EUR][1000 genomes]
rs7283652	0.87[EUR][1000 genomes]
rs8127391	0.87[EUR][1000 genomes]
rs8127537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8128118	0.83[EUR][1000 genomes]
rs8129847	0.83[EUR][1000 genomes]
rs8130099	0.84[EUR][1000 genomes]
rs8130774	0.87[EUR][1000 genomes]
rs8131091	0.87[EUR][1000 genomes]
rs8131150	0.84[EUR][1000 genomes]
rs8131263	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8131307	0.84[EUR][1000 genomes]
rs8132230	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs914157	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs971229	0.87[EUR][1000 genomes]
rs973521	0.87[EUR][1000 genomes]
rs9975410	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9978591	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9978953	0.85[EUR][1000 genomes]
rs9979547	0.85[EUR][1000 genomes]
rs9981656	0.81[EUR][1000 genomes]
rs9982122	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061831	chr21:40376316-40583555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv544443	chr21:40376316-40583555	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40523800-40525000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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