Variant report
| Variant | rs6809706 |
|---|---|
| Chromosome Location | chr3:28261989-28261990 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:28261846..28264997-chr3:28280246..28283613,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000187118 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11129314 | 1.00[CHB][hapmap] |
| rs12106806 | 1.00[CHB][hapmap] |
| rs12107183 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12107556 | 1.00[CHB][hapmap] |
| rs13069450 | 1.00[CHB][hapmap] |
| rs13074515 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MKK][hapmap] |
| rs4680746 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs4680748 | 0.87[LWK][hapmap];0.81[MKK][hapmap];0.81[YRI][hapmap] |
| rs6780084 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6794980 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs6795634 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6797580 | 1.00[JPT][hapmap] |
| rs6809917 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7624015 | 1.00[CHB][hapmap] |
| rs7624111 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3328565 | chr3:27991169-28915035 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv876648 | chr3:28060456-28280965 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv876649 | chr3:28126595-28718454 | Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
