Variant report

Variant	rs6810411
Chromosome Location	chr4:152199553-152199554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11943609	1.00[AMR][1000 genomes]
rs11943653	1.00[AMR][1000 genomes]
rs17027527	1.00[AMR][1000 genomes]
rs34467317	1.00[AMR][1000 genomes]
rs57967134	1.00[AMR][1000 genomes]
rs6815615	1.00[AMR][1000 genomes]
rs72967552	1.00[AMR][1000 genomes]
rs72967559	1.00[AMR][1000 genomes]
rs72967580	1.00[AMR][1000 genomes]
rs72969558	1.00[AMR][1000 genomes]
rs7660476	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv530159	chr4:151624865-152203910	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152177800-152200000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:152182600-152211000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:152182800-152206000	Weak transcription	NHEK	skin
4	chr4:152188600-152204000	Weak transcription	Gastric	stomach
5	chr4:152189400-152202400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:152189400-152205800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:152190800-152208600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:152191200-152204200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:152194200-152202400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:152194200-152213200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:152196000-152204000	Weak transcription	Fetal Stomach	stomach
12	chr4:152196000-152218400	Weak transcription	Psoas Muscle	Psoas
13	chr4:152196200-152199600	Weak transcription	Right Atrium	heart
14	chr4:152197800-152242400	Weak transcription	Aorta	Aorta
15	chr4:152198000-152202600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr4:152198200-152201400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:152198200-152205800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:152198400-152199600	Weak transcription	Left Ventricle	heart
19	chr4:152198400-152200000	Weak transcription	HepG2	liver
20	chr4:152198400-152200800	Weak transcription	Liver	Liver
21	chr4:152198400-152200800	Weak transcription	Lung	lung
22	chr4:152198400-152201800	Strong transcription	Fetal Intestine Small	intestine
23	chr4:152198600-152200000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:152198600-152200000	Weak transcription	Right Ventricle	heart
25	chr4:152198600-152201000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:152198600-152202000	Weak transcription	Stomach Mucosa	stomach
27	chr4:152198600-152203400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr4:152198600-152204600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:152198600-152204800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr4:152198600-152205000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:152198600-152205000	Weak transcription	Fetal Intestine Large	intestine
32	chr4:152198600-152205800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:152198800-152201000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr4:152198800-152203200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr4:152198800-152204400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr4:152198800-152221800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:152198800-152242800	Weak transcription	Fetal Lung	lung
38	chr4:152199200-152200000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:152199400-152199800	Weak transcription	Ovary	ovary

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