Variant report

Variant	rs6811282
Chromosome Location	chr4:60367869-60367870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4441788	0.84[ASN][1000 genomes]
rs6854556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879050	chr4:60306500-60414423	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879051	chr4:60335008-60442490	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6811282	TXNDC9	cis	parietal	SCAN
rs6811282	MAGED1	trans	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60366000-60368200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:60367000-60368000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:60367000-60369400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:60367200-60368000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:60367200-60368200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:60367400-60368000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:60367400-60368200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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