Variant report

Variant	rs6811479
Chromosome Location	chr4:90685584-90685585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17016107	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv879536	chr4:90678541-90775212	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90649400-90696400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:90663400-90691400	Weak transcription	Dnd41	blood
3	chr4:90675000-90686200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:90675000-90687000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:90675200-90686000	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:90675200-90687000	Weak transcription	Fetal Kidney	kidney
7	chr4:90675400-90687000	Weak transcription	Fetal Brain Male	brain
8	chr4:90675400-90696200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:90676000-90686800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:90676200-90709200	Weak transcription	HUVEC	blood vessel
11	chr4:90680800-90686400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:90683000-90686800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:90683200-90686200	Weak transcription	Brain Anterior Caudate	brain
14	chr4:90683200-90686200	Weak transcription	Brain Substantia Nigra	brain
15	chr4:90683200-90686800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:90683600-90687200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr4:90683600-90689200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:90684600-90687200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:90684800-90686000	Weak transcription	Fetal Lung	lung
20	chr4:90685200-90686400	Weak transcription	Left Ventricle	heart
21	chr4:90685200-90686800	Weak transcription	Fetal Heart	heart
22	chr4:90685200-90696400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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