Variant report

Variant	rs6811609
Chromosome Location	chr4:149822021-149822022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28384304	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28612228	0.82[AFR][1000 genomes]
rs73856234	1.00[AMR][1000 genomes]
rs9307851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470083	chr4:149817052-149903982	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149819600-149822200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:149819600-149822200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:149821800-149823200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:149821800-149823200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:149822000-149822200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:149822000-149822800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:149822000-149823200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:149822000-149823200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:149822000-149823400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:149822000-149823400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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