Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10012506	0.88[EUR][1000 genomes]
rs10020014	0.83[EUR][1000 genomes]
rs10021346	0.91[EUR][1000 genomes]
rs1106860	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11098966	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11098967	0.91[EUR][1000 genomes]
rs11933959	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12501269	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12508336	0.89[EUR][1000 genomes]
rs17013273	0.88[EUR][1000 genomes]
rs17013277	0.88[EUR][1000 genomes]
rs28794919	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4246727	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4305532	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4498144	0.96[ASN][1000 genomes]
rs4501244	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4532247	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4555656	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4975231	0.99[ASN][1000 genomes]
rs56204996	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61319476	0.87[EUR][1000 genomes]
rs7442153	0.97[ASN][1000 genomes]
rs7654004	0.88[EUR][1000 genomes]
rs7694087	0.88[EUR][1000 genomes]
rs904504	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	esv275440	chr4:129362619-129369873	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6813310	RP11-420A23.1	cis	lung	GTEx
rs6813310	RP11-420A23.1	cis	Heart Left Ventricle	GTEx
rs6813310	RP11-420A23.1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129358600-129363600	Weak transcription	Gastric	stomach
2	chr4:129361200-129362800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:129361200-129363800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:129362000-129362800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:129362600-129363800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:129362600-129364800	Weak transcription	A549	lung
7	chr4:129362600-129367000	Weak transcription	Pancreas	Pancrea
8	chr4:129362600-129368600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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