Variant report

Variant	rs6813928
Chromosome Location	chr4:141910489-141910490
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10033922	1.00[CEU][hapmap];0.90[GIH][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1364892	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1972418	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4956341	0.91[EUR][1000 genomes]
rs55701930	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55817741	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55954119	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56120624	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56163030	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56184312	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56338728	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56370801	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56404615	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56655513	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56660188	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56920778	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56996103	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57338597	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57534396	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57734965	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57739314	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57857411	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57939124	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58128843	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58184093	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58567658	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58770901	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58981627	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59135754	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59436874	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59850910	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60417984	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60454510	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60765535	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60863052	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61174534	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61179974	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6831686	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6849190	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73849453	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73849454	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73849455	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73849456	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73849457	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73849458	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73849459	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73849460	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858463	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858464	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858465	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858466	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858468	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858470	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858471	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858472	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858473	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73858474	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858476	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858477	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858480	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858674	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858675	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858677	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73858678	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858679	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73858680	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73858681	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858682	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858683	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858684	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73858685	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858686	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858687	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858688	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858689	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858690	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73858691	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858693	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858694	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858695	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858696	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858697	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858698	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858699	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858700	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858701	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73858702	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860203	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860204	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860205	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860206	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860207	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860208	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73860209	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860210	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860211	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860212	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860214	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860215	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860216	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860217	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860218	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860220	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860222	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73860223	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860224	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860225	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860226	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860227	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860228	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860234	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860239	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860240	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860241	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860243	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860245	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860246	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860247	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73860249	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7686085	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7687054	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6813928	RNF150	cis	multi-tissue	Pritchard

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141877800-141913600	Weak transcription	Right Ventricle	heart
2	chr4:141888200-141913400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:141906000-141914600	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:141906200-141910600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:141906200-141913600	Weak transcription	Fetal Stomach	stomach
6	chr4:141907200-141910800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:141908000-141911000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:141908000-141911000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:141908000-141911200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:141908000-141915400	Weak transcription	Psoas Muscle	Psoas
11	chr4:141908200-141914000	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:141910200-141910600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:141910200-141910600	Enhancers	Left Ventricle	heart
14	chr4:141910200-141911200	Enhancers	Fetal Heart	heart

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