Variant report

Variant	rs68140425
Chromosome Location	chr10:94605713-94605714
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr10:94605617-94606160	HL-60	blood:	n/a	n/a
2	POLR2A	chr10:94605632-94606184	HL-60	blood:	n/a	n/a
3	SPI1	chr10:94605618-94605999	HL-60	blood:	n/a	n/a
4	POLR2A	chr10:94605616-94609119	HUVEC	blood vessel:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94351135..94353608-chr10:94605711..94608172,2	K562	blood:
2	chr10:94448193..94452899-chr10:94604769..94609293,6	K562	blood:
3	chr10:94601204..94605771-chr10:94608144..94610303,4	MCF-7	breast:
4	chr10:94449811..94452513-chr10:94604477..94606269,2	K562	blood:
5	chr10:94604476..94607331-chr10:94608009..94611387,4	K562	blood:

No data

Variant related genes	Relation type
EXOC6	TF binding region
ENSG00000138190	Chromatin interaction
ENSG00000138160	Chromatin interaction
ENSG00000152804	Chromatin interaction

rs_ID	r²[population]
rs56164840	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
2	chr10:94598600-94607200	Weak transcription	Primary T cells from cord blood	blood
3	chr10:94599400-94607200	Weak transcription	Osteobl	bone
4	chr10:94599400-94607400	Weak transcription	Spleen	Spleen
5	chr10:94599600-94606600	Weak transcription	Lung	lung
6	chr10:94599600-94607600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:94600600-94607800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:94602600-94607600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:94602800-94607400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:94603000-94607000	Weak transcription	Fetal Intestine Large	intestine
11	chr10:94603000-94607000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:94603200-94605800	Weak transcription	HepG2	liver
13	chr10:94603200-94606400	Weak transcription	Hela-S3	cervix
14	chr10:94603200-94607200	Weak transcription	Liver	Liver
15	chr10:94603200-94607400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:94603200-94607400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:94603400-94607200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr10:94603400-94607200	Weak transcription	A549	lung
19	chr10:94603400-94607400	Weak transcription	Adipose Nuclei	Adipose
20	chr10:94604000-94605800	Enhancers	Duodenum Mucosa	Duodenum
21	chr10:94604000-94606800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr10:94604200-94607200	Weak transcription	Placenta	Placenta
23	chr10:94604200-94607400	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:94604200-94607400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:94604200-94607600	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:94604400-94605800	Strong transcription	HUVEC	blood vessel
27	chr10:94605200-94606800	Strong transcription	K562	blood
28	chr10:94605400-94606000	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr10:94605400-94608000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr10:94605600-94606600	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr10:94605600-94606600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:94605600-94606600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:94605600-94607600	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links