Variant report

Variant	rs68148988
Chromosome Location	chr1:209328485-209328486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10779502	0.81[AFR][1000 genomes]
rs10863757	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933623	0.81[AFR][1000 genomes]
rs7514220	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873137	chr1:209301571-209338673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv522816	chr1:209325038-209342622	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209326800-209328600	Enhancers	HSMM	muscle
2	chr1:209327400-209328600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:209327800-209328600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:209327800-209332000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:209328000-209329600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:209328200-209329000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:209328200-209329200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:209328200-209331600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:209328200-209334000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:209328400-209328600	Flanking Active TSS	HSMMtube	muscle
11	chr1:209328400-209329000	Enhancers	Small Intestine	intestine
12	chr1:209328400-209329200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr1:209328400-209329200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:209328400-209329200	Enhancers	Fetal Stomach	stomach
15	chr1:209328400-209329400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:209328400-209329800	Enhancers	Fetal Intestine Large	intestine
17	chr1:209328400-209329800	Enhancers	Fetal Muscle Leg	muscle
18	chr1:209328400-209330000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:209328400-209331000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:209328400-209331200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr1:209328400-209332400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr1:209328400-209334000	Enhancers	HUES64 Cell Line	embryonic stem cell

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