Variant report

Variant	rs6815547
Chromosome Location	chr4:47066603-47066604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11727328	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34809102	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59619890	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47054000-47067000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:47054400-47066800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:47054600-47066800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:47054600-47075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:47063800-47071200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:47064200-47066800	Weak transcription	Brain Anterior Caudate	brain
7	chr4:47064200-47073000	Weak transcription	NH-A	brain
8	chr4:47065200-47070600	Weak transcription	Osteobl	bone
9	chr4:47065400-47073200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:47066000-47069400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:47066600-47068400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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