Variant report

Variant	rs681604
Chromosome Location	chr10:6438081-6438082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10796145	0.93[JPT][hapmap]
rs10906426	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10906429	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs11258461	0.80[ASN][1000 genomes]
rs11258500	0.92[CHB][hapmap];0.91[CHD][hapmap];0.88[TSI][hapmap];0.83[ASN][1000 genomes]
rs11258501	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11596750	0.92[CHB][hapmap];0.91[CHD][hapmap]
rs12413588	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs12572911	0.88[TSI][hapmap]
rs2236380	0.92[CHB][hapmap];0.96[CHD][hapmap]
rs2296125	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[TSI][hapmap];0.86[ASN][1000 genomes]
rs2296126	0.84[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs629321	0.86[JPT][hapmap]
rs631968	0.92[CHB][hapmap];0.96[CHD][hapmap]
rs681071	0.83[TSI][hapmap]
rs688853	0.83[TSI][hapmap]
rs7916702	0.84[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs944714	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6425600-6443600	Weak transcription	Aorta	Aorta
2	chr10:6431400-6439200	Weak transcription	Thymus	Thymus
3	chr10:6433800-6448600	Weak transcription	Primary T cells from cord blood	blood
4	chr10:6434600-6443600	Weak transcription	Fetal Brain Female	brain
5	chr10:6436400-6441400	Weak transcription	Fetal Lung	lung
6	chr10:6436400-6443600	Weak transcription	Fetal Kidney	kidney
7	chr10:6436600-6438200	Weak transcription	A549	lung
8	chr10:6436600-6443400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:6436600-6443400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:6436800-6438400	Weak transcription	Primary B cells from cord blood	blood
11	chr10:6436800-6440400	Weak transcription	Brain Substantia Nigra	brain
12	chr10:6437200-6444000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:6437600-6439400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr10:6437600-6444400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:6437800-6439600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:6438000-6438200	Enhancers	Primary hematopoietic stem cells	blood
17	chr10:6438000-6438400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr10:6438000-6439000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links