Variant report

Variant	rs6816322
Chromosome Location	chr4:129161972-129161973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:129160558..129162519-chr4:129164377..129167421,4	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10001857	0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs12509379	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12647536	0.89[ASN][1000 genomes]
rs41300367	0.93[ASN][1000 genomes]
rs4975198	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7677888	0.86[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7680523	0.93[ASN][1000 genomes]
rs7681053	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7681074	0.93[ASN][1000 genomes]
rs7682168	0.89[ASN][1000 genomes]
rs9683654	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129161200-129162400	Enhancers	Placenta Amnion	Placenta Amnion
2	chr4:129161200-129162800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:129161200-129165600	Enhancers	Placenta	Placenta
4	chr4:129161400-129162400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:129161400-129162400	Enhancers	NHDF-Ad	bronchial
6	chr4:129161400-129162800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:129161600-129162400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:129161600-129162600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:129161600-129163600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:129161600-129163800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:129161600-129163800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:129161600-129163800	Enhancers	HMEC	breast
13	chr4:129161600-129163800	Enhancers	HSMM	muscle
14	chr4:129161800-129162200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:129161800-129162200	Enhancers	HSMMtube	muscle
16	chr4:129161800-129162600	Enhancers	NHEK	skin
17	chr4:129161800-129162800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:129161800-129163200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:129161800-129163800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:129161800-129163800	Enhancers	NHLF	lung
21	chr4:129161800-129164000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:129161800-129164000	Enhancers	Osteobl	bone

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