Variant report

Variant	rs6816381
Chromosome Location	chr4:20587256-20587257
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20586832..20588489-chr4:20593104..20594930,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56411745	1.00[EUR][1000 genomes]
rs59286212	1.00[EUR][1000 genomes]
rs61375089	1.00[EUR][1000 genomes]
rs61399747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790705	1.00[EUR][1000 genomes]
rs61790708	1.00[EUR][1000 genomes]
rs61790710	1.00[EUR][1000 genomes]
rs7678566	1.00[EUR][1000 genomes]
rs7686636	1.00[EUR][1000 genomes]
rs7686831	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20535800-20593600	Weak transcription	Fetal Kidney	kidney
3	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
4	chr4:20555600-20599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:20556000-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:20567000-20604000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:20567200-20605200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:20567200-20617000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:20571200-20593800	Weak transcription	Osteobl	bone
10	chr4:20574800-20592200	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:20575200-20590800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:20577400-20597200	Weak transcription	Fetal Stomach	stomach
13	chr4:20578000-20617400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:20578200-20616800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:20578400-20610000	Weak transcription	Fetal Brain Male	brain
16	chr4:20578600-20594200	Weak transcription	NHLF	lung
17	chr4:20579000-20593600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:20579400-20605600	Weak transcription	Adipose Nuclei	Adipose
19	chr4:20583400-20589200	Weak transcription	NHDF-Ad	bronchial
20	chr4:20584200-20590600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:20584200-20600200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:20584400-20591200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:20585800-20591200	Weak transcription	NHEK	skin
24	chr4:20586200-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:20586400-20591000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:20586400-20591000	Weak transcription	Fetal Lung	lung
27	chr4:20586400-20591800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr4:20586800-20588400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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