Variant report

Variant	rs68165630
Chromosome Location	chr6:121697835-121697836
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1925220	0.82[EUR][1000 genomes]
rs1925221	0.81[ASN][1000 genomes]
rs2147710	0.83[EUR][1000 genomes]
rs2147711	0.83[EUR][1000 genomes]
rs2182077	0.83[EUR][1000 genomes]
rs2389417	0.80[EUR][1000 genomes]
rs2389418	0.83[EUR][1000 genomes]
rs2389420	0.83[EUR][1000 genomes]
rs56140776	0.88[ASN][1000 genomes]
rs59205526	0.90[EUR][1000 genomes]
rs6569202	0.83[EUR][1000 genomes]
rs66792513	0.83[EUR][1000 genomes]
rs67199580	0.81[ASN][1000 genomes]
rs68043442	0.81[ASN][1000 genomes]
rs68166899	0.83[EUR][1000 genomes]
rs6917457	0.83[EUR][1000 genomes]
rs6940718	0.83[EUR][1000 genomes]
rs7747064	0.83[EUR][1000 genomes]
rs7747721	0.83[EUR][1000 genomes]
rs7747777	0.83[EUR][1000 genomes]
rs9320813	0.83[EUR][1000 genomes]
rs9482146	0.83[EUR][1000 genomes]
rs9482147	0.81[EUR][1000 genomes]
rs9482148	0.83[EUR][1000 genomes]
rs9482154	0.81[ASN][1000 genomes]
rs9482155	0.81[ASN][1000 genomes]
rs9490203	0.83[EUR][1000 genomes]
rs9490217	0.90[EUR][1000 genomes]
rs9490219	0.81[ASN][1000 genomes]
rs9490220	0.81[ASN][1000 genomes]
rs9490221	0.81[ASN][1000 genomes]
rs9490222	0.81[ASN][1000 genomes]
rs9490225	0.81[ASN][1000 genomes]
rs9490226	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121697200-121698800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:121697400-121698000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:121697400-121698200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr6:121697400-121698200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:121697400-121698200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:121697400-121698800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:121697800-121698200	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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