Variant report

Variant	rs6816939
Chromosome Location	chr4:166060288-166060289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166057805..166060502-chr4:166299440..166301033,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10011081	1.00[ASN][1000 genomes]
rs10212912	1.00[ASN][1000 genomes]
rs11936863	1.00[ASN][1000 genomes]
rs11940947	1.00[ASN][1000 genomes]
rs17046040	1.00[ASN][1000 genomes]
rs17046047	1.00[ASN][1000 genomes]
rs28412902	1.00[ASN][1000 genomes]
rs28477276	1.00[ASN][1000 genomes]
rs28517300	1.00[ASN][1000 genomes]
rs28569144	1.00[ASN][1000 genomes]
rs28613383	1.00[ASN][1000 genomes]
rs35185510	1.00[ASN][1000 genomes]
rs55820858	1.00[ASN][1000 genomes]
rs57666521	1.00[ASN][1000 genomes]
rs57862250	0.87[AFR][1000 genomes]
rs60356884	1.00[ASN][1000 genomes]
rs6815850	1.00[ASN][1000 genomes]
rs6816615	1.00[ASN][1000 genomes]
rs6842480	1.00[ASN][1000 genomes]
rs6850576	1.00[ASN][1000 genomes]
rs6850775	1.00[ASN][1000 genomes]
rs72991930	0.87[AFR][1000 genomes]
rs7665592	1.00[ASN][1000 genomes]
rs7666107	1.00[ASN][1000 genomes]
rs7666108	1.00[ASN][1000 genomes]
rs7675031	1.00[ASN][1000 genomes]
rs7679723	1.00[ASN][1000 genomes]
rs7680096	1.00[ASN][1000 genomes]
rs9992764	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166060200-166060600	Enhancers	Liver	Liver

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