Variant report

Variant	rs6817084
Chromosome Location	chr4:119764468-119764469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119764467..119766510-chr4:119790526..119793224,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1019696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11098453	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11098459	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11098460	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12512594	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12643205	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13112913	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13139244	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1365549	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1365550	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1365551	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1962840	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2114461	0.85[ASN][1000 genomes]
rs2303512	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2389688	0.94[ASN][1000 genomes]
rs34057511	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35934778	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36096663	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775839	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775840	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4833592	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4833593	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4834704	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4834705	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4834706	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6811006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7375858	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3376985	chr4:119757182-119774736	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119758000-119764600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:119758000-119764600	Weak transcription	Psoas Muscle	Psoas
3	chr4:119758200-119766800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:119758200-119771200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:119762200-119764800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:119762200-119764800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:119762800-119771400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:119763000-119764600	Enhancers	NHLF	lung
9	chr4:119763000-119766800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:119763000-119767400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:119763000-119767600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:119763000-119769800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:119763200-119764600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:119763200-119766800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:119763200-119767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:119763200-119769600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:119763400-119768200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr4:119764000-119766000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:119764000-119771000	Weak transcription	NHDF-Ad	bronchial
20	chr4:119764000-119771200	Weak transcription	NHEK	skin
21	chr4:119764000-119771200	Weak transcription	Osteobl	bone
22	chr4:119764000-119771600	Weak transcription	HSMM	muscle
23	chr4:119764400-119764800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr4:119764400-119764800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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