Variant report
| Variant | rs68174149 |
|---|---|
| Chromosome Location | chr8:114324632-114324633 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TRPS1-4 | chr8:114321434-114327022 | NONHSAT128345 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs17606509 | 0.83[ASN][1000 genomes] |
| rs56137168 | 0.95[ASN][1000 genomes] |
| rs56214941 | 0.85[ASN][1000 genomes] |
| rs56362921 | 0.85[ASN][1000 genomes] |
| rs57236500 | 0.83[ASN][1000 genomes] |
| rs58207334 | 0.95[ASN][1000 genomes] |
| rs58426306 | 0.95[ASN][1000 genomes] |
| rs59767974 | 0.95[ASN][1000 genomes] |
| rs67017686 | 0.95[ASN][1000 genomes] |
| rs67088257 | 0.90[ASN][1000 genomes] |
| rs67927045 | 1.00[ASN][1000 genomes] |
| rs68028912 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6996697 | 0.95[ASN][1000 genomes] |
| rs72685897 | 0.83[ASN][1000 genomes] |
| rs72687620 | 0.85[ASN][1000 genomes] |
| rs72687621 | 0.85[ASN][1000 genomes] |
| rs72687623 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754581 | chr8:114029421-114419106 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv916637 | chr8:114116303-114338450 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1022803 | chr8:114180224-114354093 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
