Variant report

Variant	rs6817475
Chromosome Location	chr4:20761511-20761512
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20759824..20762284-chr4:20763447..20765411,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10017693	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10018931	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10022322	0.82[CEU][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10024002	0.83[CEU][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10025286	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10034054	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10084802	0.91[AFR][1000 genomes]
rs10805219	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11941041	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11944886	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12152652	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12331966	0.84[CEU][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12644782	0.87[CEU][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12650007	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16869886	0.94[ASN][1000 genomes]
rs16869889	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1985322	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2052775	0.84[CEU][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2114472	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2114473	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2288308	0.87[CEU][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2322688	0.91[CEU][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28524474	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28637181	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28714128	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28788006	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3764964	0.83[CEU][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3764965	0.94[ASN][1000 genomes]
rs3764966	0.84[CEU][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3764967	0.82[ASN][1000 genomes]
rs3796639	0.82[ASN][1000 genomes]
rs3815872	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4414951	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4431223	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4510461	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4640668	0.91[AFR][1000 genomes]
rs57740160	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59335491	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62410126	0.82[ASN][1000 genomes]
rs62410159	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62411662	0.80[ASN][1000 genomes]
rs6447974	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6447975	0.88[CEU][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6447976	0.88[CEU][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6447978	0.87[CEU][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6447982	0.96[CEU][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6811030	0.87[CEU][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6811505	0.88[CEU][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6831295	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6831516	0.87[CEU][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73240292	0.82[ASN][1000 genomes]
rs7655154	0.83[CEU][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7660006	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7666288	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7673805	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7674453	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7681691	0.82[CEU][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7685481	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7696618	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs990206	0.96[CEU][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9995438	0.87[AFR][1000 genomes]
rs9995697	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv829876	chr4:20638736-20835621	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv869522	chr4:20724433-20938248	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1848625	chr4:20760089-20821762	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20740600-20763600	Weak transcription	Brain Anterior Caudate	brain
2	chr4:20740800-20763600	Weak transcription	HSMMtube	muscle
3	chr4:20740800-20770600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:20740800-20791200	Weak transcription	Ovary	ovary
5	chr4:20746800-20775000	Weak transcription	Left Ventricle	heart
6	chr4:20749600-20763800	Weak transcription	Brain Germinal Matrix	brain
7	chr4:20755800-20761600	Weak transcription	Fetal Lung	lung
8	chr4:20757000-20763800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:20761400-20761600	ZNF genes & repeats	Aorta	Aorta

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