Variant report

Variant	rs6817482
Chromosome Location	chr4:55371528-55371529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10011083	1.00[EUR][1000 genomes]
rs1507946	1.00[EUR][1000 genomes]
rs1507947	1.00[EUR][1000 genomes]
rs1507948	1.00[EUR][1000 genomes]
rs17084350	1.00[EUR][1000 genomes]
rs17084359	1.00[EUR][1000 genomes]
rs1858022	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1911675	1.00[EUR][1000 genomes]
rs28450944	1.00[EUR][1000 genomes]
rs28616594	1.00[EUR][1000 genomes]
rs28673112	1.00[EUR][1000 genomes]
rs28714253	1.00[EUR][1000 genomes]
rs58353454	1.00[EUR][1000 genomes]
rs6835423	1.00[EUR][1000 genomes]
rs7661344	1.00[EUR][1000 genomes]
rs7681957	1.00[EUR][1000 genomes]
rs7690116	1.00[EUR][1000 genomes]
rs9654329	1.00[EUR][1000 genomes]
rs9985648	1.00[EUR][1000 genomes]
rs9985690	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv997430	chr4:55253397-55529288	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55364600-55379600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:55366200-55371600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:55371400-55372000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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