Variant report

Variant	rs6817505
Chromosome Location	chr4:153140808-153140809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1425396	1.00[AMR][1000 genomes]
rs17028517	1.00[AMR][1000 genomes]
rs17028539	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153139800-153141200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:153140200-153141600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:153140200-153142000	Enhancers	HSMM	muscle
4	chr4:153140400-153141600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:153140400-153141600	Weak transcription	HSMMtube	muscle
6	chr4:153140400-153142000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:153140400-153142800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:153140600-153141000	Weak transcription	NHEK	skin
9	chr4:153140800-153142000	Enhancers	HMEC	breast
10	chr4:153140800-153142400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links