Variant report

Variant	rs6818582
Chromosome Location	chr4:16039097-16039098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13140264	0.83[CEU][hapmap]
rs1400770	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16025600-16045000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:16025600-16050600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:16025800-16057600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:16026400-16066600	Weak transcription	Colonic Mucosa	Colon
5	chr4:16026400-16066600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:16031200-16040000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:16032800-16039800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:16033000-16039800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:16033200-16039200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:16033200-16039600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr4:16034400-16050400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:16034400-16072200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:16034800-16039800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr4:16035000-16042800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:16035000-16044800	Weak transcription	Fetal Brain Female	brain
16	chr4:16035200-16050800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:16035200-16050800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:16035600-16040000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:16035800-16039200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr4:16035800-16040000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:16036000-16039600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr4:16036400-16039800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr4:16036400-16057800	Weak transcription	Fetal Intestine Small	intestine
24	chr4:16036600-16041600	Weak transcription	Fetal Heart	heart
25	chr4:16036600-16042000	Weak transcription	Fetal Brain Male	brain
26	chr4:16036600-16045200	Weak transcription	Pancreas	Pancrea
27	chr4:16036800-16045200	Weak transcription	Stomach Mucosa	stomach
28	chr4:16037000-16039800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:16037200-16039400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:16037200-16040000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:16037400-16039600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:16037800-16039800	Enhancers	H1 Cell Line	embryonic stem cell
33	chr4:16037800-16039800	Genic enhancers	Primary hematopoietic stem cells	blood
34	chr4:16037800-16039800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr4:16038000-16039200	Strong transcription	Fetal Stomach	stomach
36	chr4:16038200-16039800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr4:16038200-16040000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:16038600-16039800	Enhancers	Placenta	Placenta
39	chr4:16038800-16045000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr4:16039000-16039600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr4:16039000-16039600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr4:16039000-16039800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr4:16039000-16039800	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr4:16039000-16039800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr4:16039000-16039800	Strong transcription	Fetal Muscle Leg	muscle

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