Variant report

Variant	rs6819189
Chromosome Location	chr4:151320953-151320954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:151314752..151316835-chr4:151320252..151322487,2	K562	blood:
2	chr4:151319888..151322699-chr4:151326262..151329136,2	K562	blood:
3	chr4:151315444..151317639-chr4:151319800..151322753,2	MCF-7	breast:
4	chr4:151315284..151318816-chr4:151320374..151325337,6	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11728828	0.82[EUR][1000 genomes]
rs13116152	0.84[EUR][1000 genomes]
rs13121654	0.81[EUR][1000 genomes]
rs13132281	0.82[EUR][1000 genomes]
rs13139265	0.86[EUR][1000 genomes]
rs13150556	0.86[EUR][1000 genomes]
rs13152380	0.82[EUR][1000 genomes]
rs1910722	0.82[EUR][1000 genomes]
rs2055687	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4367158	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7686589	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv880259	chr4:151210761-151367745	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv880260	chr4:151214038-151331191	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6819189	LRBA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151272000-151371400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:151286600-151355600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:151290200-151367400	Weak transcription	K562	blood
4	chr4:151292400-151361000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:151307000-151348800	Weak transcription	Aorta	Aorta
6	chr4:151307200-151323400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:151307200-151324000	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:151307200-151324200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:151307200-151332400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:151309600-151332600	Weak transcription	Stomach Mucosa	stomach
11	chr4:151311600-151343800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:151312800-151332400	Weak transcription	Primary B cells from cord blood	blood
13	chr4:151313200-151358200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:151313600-151358000	Weak transcription	GM12878-XiMat	blood
15	chr4:151314000-151324200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:151314200-151324200	Weak transcription	Pancreas	Pancrea
17	chr4:151314600-151332600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:151314600-151342800	Weak transcription	Primary T cells from cord blood	blood
19	chr4:151314800-151321000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:151315000-151324200	Weak transcription	Lung	lung
21	chr4:151315000-151324200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:151315000-151332600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:151315600-151344000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr4:151315800-151324200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:151315800-151325200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr4:151315800-151359400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr4:151317400-151358800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:151317800-151324000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr4:151318400-151322600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:151319000-151324000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr4:151319000-151371000	Weak transcription	Left Ventricle	heart
32	chr4:151319200-151328600	Weak transcription	Adipose Nuclei	Adipose
33	chr4:151320400-151321800	Strong transcription	Fetal Intestine Large	intestine
34	chr4:151320600-151321400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:151320600-151321400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:151320600-151324200	Weak transcription	Psoas Muscle	Psoas
37	chr4:151320800-151321200	Strong transcription	Fetal Intestine Small	intestine

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