Variant report

Variant	rs6819558
Chromosome Location	chr4:121931470-121931471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1020500	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108250	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108616	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108580	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450467	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450468	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1817034	1.00[ASN][1000 genomes]
rs34433706	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34498056	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34659347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34760476	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35386491	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35402261	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36089502	1.00[ASN][1000 genomes]
rs3956526	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075801	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426804	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4435764	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4488957	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59229457	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534219	1.00[JPT][hapmap]
rs6814333	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816015	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825861	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829576	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832312	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6841260	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844456	1.00[JPT][hapmap]
rs6858077	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71602306	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675722	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690446	0.85[JPT][hapmap]
rs7690755	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121925600-121933800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:121928600-121936400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr4:121929000-121932600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr4:121929000-121933800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr4:121929600-121932000	Enhancers	Fetal Intestine Large	intestine
6	chr4:121929600-121932600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr4:121929800-121931600	Enhancers	Colon Smooth Muscle	Colon
8	chr4:121929800-121931800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:121930000-121933600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:121930200-121934200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:121930200-121934400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:121930400-121934200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:121930600-121932600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr4:121930600-121933600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:121930800-121931800	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr4:121930800-121932600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr4:121931000-121931800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr4:121931000-121932000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:121931200-121932000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:121931200-121932600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr4:121931200-121933800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr4:121931400-121933200	Weak transcription	Fetal Intestine Small	intestine
23	chr4:121931400-121933400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:121931400-121933600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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