Variant report

Variant	rs6820947
Chromosome Location	chr4:175748395-175748396
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175741383..175744501-chr4:175747246..175749375,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10017934	1.00[CHB][hapmap]
rs10155340	1.00[CHB][hapmap]
rs10520293	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs10520294	1.00[CHB][hapmap]
rs11133061	1.00[CHB][hapmap]
rs13144382	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1352062	1.00[CHB][hapmap]
rs17365700	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17365870	1.00[CHB][hapmap]
rs4254747	1.00[CHB][hapmap]
rs4271992	1.00[CHB][hapmap]
rs4273448	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4352456	1.00[CHB][hapmap]
rs4525948	1.00[CHB][hapmap]
rs6553850	1.00[CHB][hapmap]
rs67481417	0.86[EUR][1000 genomes]
rs6825046	1.00[CHB][hapmap]
rs6828361	1.00[CHB][hapmap]
rs6842643	1.00[CHB][hapmap]
rs6851555	1.00[CHB][hapmap]
rs72710212	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7677157	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034301	chr4:175656538-176055348	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv537364	chr4:175656538-176055348	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1030235	chr4:175663839-175969742	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv537365	chr4:175663839-175969742	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv830156	chr4:175725040-175916435	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6820947	ANKRD32	trans	cerebellum	SCAN
rs6820947	GLRA3	cis	parietal	SCAN
rs6820947	MORF4	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175747200-175751600	Active TSS	Pancreatic Islets	Pancreatic Islet

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