Variant report

Variant	rs6820985
Chromosome Location	chr4:94347006-94347007
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10010334	0.86[ASN][1000 genomes]
rs10012194	1.00[ASN][1000 genomes]
rs10012783	1.00[ASN][1000 genomes]
rs10015087	1.00[ASN][1000 genomes]
rs10019267	1.00[ASN][1000 genomes]
rs10022114	1.00[ASN][1000 genomes]
rs10025149	1.00[ASN][1000 genomes]
rs10025408	1.00[ASN][1000 genomes]
rs10029349	1.00[ASN][1000 genomes]
rs10034637	1.00[ASN][1000 genomes]
rs11933728	1.00[ASN][1000 genomes]
rs11937272	1.00[ASN][1000 genomes]
rs11938668	1.00[ASN][1000 genomes]
rs11938992	1.00[ASN][1000 genomes]
rs11940945	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941449	1.00[ASN][1000 genomes]
rs13328057	1.00[ASN][1000 genomes]
rs1485012	1.00[ASN][1000 genomes]
rs1485019	1.00[ASN][1000 genomes]
rs17020544	1.00[ASN][1000 genomes]
rs17020556	1.00[ASN][1000 genomes]
rs17020564	1.00[ASN][1000 genomes]
rs17020586	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020631	0.85[ASN][1000 genomes]
rs17020639	0.85[ASN][1000 genomes]
rs1905707	1.00[ASN][1000 genomes]
rs1905708	1.00[ASN][1000 genomes]
rs1905709	1.00[ASN][1000 genomes]
rs1905734	1.00[ASN][1000 genomes]
rs1948017	1.00[ASN][1000 genomes]
rs1948018	1.00[ASN][1000 genomes]
rs1994252	1.00[ASN][1000 genomes]
rs1994253	1.00[ASN][1000 genomes]
rs28480348	1.00[ASN][1000 genomes]
rs28683046	1.00[ASN][1000 genomes]
rs28768784	1.00[ASN][1000 genomes]
rs57028846	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60524906	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61661603	1.00[ASN][1000 genomes]
rs6532407	0.85[ASN][1000 genomes]
rs6848749	0.85[ASN][1000 genomes]
rs72884535	1.00[ASN][1000 genomes]
rs72884570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72884576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72884579	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72884580	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72884583	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72884591	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72886215	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72886224	0.85[ASN][1000 genomes]
rs7655758	1.00[ASN][1000 genomes]
rs7662289	1.00[ASN][1000 genomes]
rs7667044	1.00[ASN][1000 genomes]
rs7670552	1.00[ASN][1000 genomes]
rs7676623	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688091	1.00[ASN][1000 genomes]
rs7691929	1.00[ASN][1000 genomes]
rs7694361	1.00[ASN][1000 genomes]
rs7695982	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307123	1.00[ASN][1000 genomes]
rs9631716	1.00[ASN][1000 genomes]
rs9790383	1.00[ASN][1000 genomes]
rs9992229	1.00[ASN][1000 genomes]
rs9998583	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2830401	chr4:94141655-94450106	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3584808	chr4:94156602-94559327	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv533846	chr4:94264488-94462921	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv3336442	chr4:94344229-94348727	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94338000-94353600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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