Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10014689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10017184	0.90[ASN][1000 genomes]
rs10019018	0.93[ASN][1000 genomes]
rs10213072	0.90[ASN][1000 genomes]
rs11133365	0.93[ASN][1000 genomes]
rs11723072	0.90[ASN][1000 genomes]
rs12152606	0.90[ASN][1000 genomes]
rs12509589	0.93[ASN][1000 genomes]
rs13107781	0.93[ASN][1000 genomes]
rs13128075	0.90[ASN][1000 genomes]
rs13139198	0.93[ASN][1000 genomes]
rs13146373	0.90[ASN][1000 genomes]
rs1380073	0.93[ASN][1000 genomes]
rs1551636	0.93[ASN][1000 genomes]
rs17081857	0.93[ASN][1000 genomes]
rs1870381	0.93[ASN][1000 genomes]
rs1870382	0.93[ASN][1000 genomes]
rs2015048	0.93[ASN][1000 genomes]
rs2085621	0.93[ASN][1000 genomes]
rs28702837	1.00[ASN][1000 genomes]
rs28841975	0.93[ASN][1000 genomes]
rs4277836	0.87[ASN][1000 genomes]
rs4864963	0.85[ASN][1000 genomes]
rs7696873	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56080600-56084800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:56080800-56084800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:56082600-56084000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:56083000-56083800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:56083200-56083600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:56083200-56083800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:56083200-56083800	Enhancers	NHDF-Ad	bronchial
8	chr4:56083200-56084000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:56083400-56084600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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