Variant report

Variant	rs6821500
Chromosome Location	chr4:84770757-84770758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10005962	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11737800	0.85[ASN][1000 genomes]
rs13104910	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13108496	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17356992	0.86[ASN][1000 genomes]
rs2129966	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4693650	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6535500	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6816402	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6821323	0.85[EUR][1000 genomes]
rs6821697	0.85[ASN][1000 genomes]
rs6845813	0.86[EUR][1000 genomes]
rs7681626	0.84[EUR][1000 genomes]
rs9307830	0.89[EUR][1000 genomes]
rs963847	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9997170	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84760000-84772400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:84768200-84771800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:84769200-84771600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:84769800-84772200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:84770000-84771000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:84770000-84771600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:84770000-84771800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:84770200-84771000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:84770200-84771000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:84770200-84771800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:84770400-84771600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:84770400-84773000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:84770600-84771600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:84770600-84771600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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