Variant report

Variant	rs6822005
Chromosome Location	chr4:79077496-79077497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11731290	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4298158	0.94[EUR][1000 genomes]
rs7678330	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7699864	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9284618	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv879502	chr4:79052851-79144309	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79067200-79078000	Weak transcription	Psoas Muscle	Psoas
2	chr4:79071000-79083600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:79071200-79078000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:79071200-79082600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:79071400-79078000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:79071400-79096600	Weak transcription	Pancreas	Pancrea
7	chr4:79073600-79082000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:79074400-79077800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:79075400-79078400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:79075600-79078200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:79075800-79078200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:79075800-79078400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:79076000-79077600	Flanking Active TSS	HepG2	liver
14	chr4:79076000-79077800	Enhancers	Fetal Lung	lung
15	chr4:79076000-79078400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:79076200-79077800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:79076600-79077600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:79076600-79078000	Enhancers	Fetal Intestine Large	intestine
19	chr4:79076600-79078400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:79076800-79078000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:79076800-79078200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:79077200-79078200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr4:79077400-79078400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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