Variant report

Variant	rs6822203
Chromosome Location	chr4:95215014-95215015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10027578	0.83[AMR][1000 genomes]
rs17310498	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6817118	0.81[AMR][1000 genomes]
rs6848140	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9307138	0.86[AMR][1000 genomes]
rs9884428	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
2	chr4:95185200-95226800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:95194200-95215400	Weak transcription	Gastric	stomach
4	chr4:95202400-95215800	Weak transcription	Brain Substantia Nigra	brain
5	chr4:95202400-95216400	Weak transcription	Fetal Brain Male	brain
6	chr4:95202800-95215800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:95204600-95215800	Weak transcription	Fetal Kidney	kidney
8	chr4:95204800-95215600	Weak transcription	Brain Anterior Caudate	brain
9	chr4:95204800-95220000	Weak transcription	K562	blood
10	chr4:95205000-95215200	Weak transcription	Small Intestine	intestine
11	chr4:95205200-95215200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:95205400-95215600	Weak transcription	NHLF	lung
13	chr4:95205400-95225000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:95205800-95216000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:95205800-95216000	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:95205800-95216400	Weak transcription	HSMMtube	muscle
17	chr4:95206000-95219800	Weak transcription	NHEK	skin
18	chr4:95206600-95215600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:95207000-95217000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr4:95207200-95215400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:95207600-95216400	Weak transcription	Ovary	ovary
22	chr4:95207800-95219800	Weak transcription	Fetal Intestine Large	intestine
23	chr4:95208200-95227200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr4:95208400-95215200	Weak transcription	Fetal Stomach	stomach
25	chr4:95208800-95215800	Weak transcription	Placenta	Placenta
26	chr4:95208800-95216000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr4:95208800-95217200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr4:95208800-95218600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr4:95208800-95227200	Weak transcription	Left Ventricle	heart
30	chr4:95209000-95215800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:95209200-95215400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:95210000-95228600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:95211000-95215200	Weak transcription	HUVEC	blood vessel
34	chr4:95211200-95215200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr4:95211400-95217200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr4:95211400-95220000	Weak transcription	HMEC	breast
37	chr4:95211400-95220200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:95211600-95215600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr4:95211600-95216000	Weak transcription	Fetal Thymus	thymus
40	chr4:95211800-95217200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:95212200-95219800	Weak transcription	HepG2	liver
42	chr4:95212800-95228800	Weak transcription	A549	lung
43	chr4:95213000-95215400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr4:95213000-95215600	Weak transcription	GM12878-XiMat	blood
45	chr4:95213200-95219800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr4:95213200-95219800	Weak transcription	Liver	Liver
47	chr4:95213400-95215600	Weak transcription	Colon Smooth Muscle	Colon
48	chr4:95213400-95215800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr4:95213400-95216000	Weak transcription	Fetal Lung	lung
50	chr4:95213600-95215200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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