Variant report

Variant	rs6822488
Chromosome Location	chr4:91469295-91469296
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10010423	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10021478	0.97[ASN][1000 genomes]
rs10030564	0.81[JPT][hapmap]
rs11727913	0.81[ASN][1000 genomes]
rs11943760	0.95[ASN][1000 genomes]
rs1510795	0.81[JPT][hapmap]
rs1606038	0.86[JPT][hapmap]
rs17017106	0.80[ASN][1000 genomes]
rs17017142	0.81[ASN][1000 genomes]
rs17017145	0.81[ASN][1000 genomes]
rs2008600	0.80[JPT][hapmap]
rs2036152	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2036153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6532233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6813989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6815696	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6825317	0.87[JPT][hapmap]
rs6828345	0.81[ASN][1000 genomes]
rs6828402	0.81[ASN][1000 genomes]
rs6849123	0.81[JPT][hapmap]
rs6855755	0.96[ASN][1000 genomes]
rs6858175	0.94[ASN][1000 genomes]
rs72885079	0.95[ASN][1000 genomes]
rs7659085	0.80[JPT][hapmap]
rs7673757	0.97[ASN][1000 genomes]
rs7692492	0.86[JPT][hapmap]
rs7697633	0.86[JPT][hapmap]
rs9991640	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1830936	chr4:91287204-91546380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv879543	chr4:91428124-91524285	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv879544	chr4:91453933-91490418	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91469000-91470000	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links