Variant report

Variant	rs6822602
Chromosome Location	chr4:30667298-30667299
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2029201	0.85[AFR][1000 genomes]
rs28556739	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55710337	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55904258	1.00[ASN][1000 genomes]
rs56988158	1.00[ASN][1000 genomes]
rs59942258	0.82[AFR][1000 genomes]
rs6827656	0.82[AFR][1000 genomes]
rs6844908	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73117592	1.00[ASN][1000 genomes]
rs7658553	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7673202	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7680542	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7680930	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878809	chr4:30652196-30676425	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30665200-30667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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