Variant report

Variant	rs6822610
Chromosome Location	chr4:124472276-124472277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35279358	1.00[AMR][1000 genomes]
rs6832415	1.00[AMR][1000 genomes]
rs6832901	1.00[AMR][1000 genomes]
rs7665122	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006945	chr4:124206328-124503863	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv537240	chr4:124206328-124503863	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv879871	chr4:124437842-124527958	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879872	chr4:124441989-124527958	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124460800-124475600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:124469000-124474800	Weak transcription	Placenta	Placenta
3	chr4:124469200-124474600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:124469400-124474000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:124469400-124474400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:124469400-124475000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:124469400-124475000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:124469600-124474400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:124469600-124474800	Weak transcription	Pancreas	Pancrea
10	chr4:124469800-124473000	Weak transcription	Fetal Kidney	kidney
11	chr4:124469800-124474400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:124470000-124474600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:124470200-124474400	Weak transcription	Colonic Mucosa	Colon
14	chr4:124470200-124474400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:124470400-124473800	Weak transcription	Stomach Mucosa	stomach
16	chr4:124470800-124474000	Weak transcription	HepG2	liver
17	chr4:124471000-124473600	Weak transcription	Fetal Intestine Large	intestine
18	chr4:124471200-124475400	Weak transcription	Fetal Stomach	stomach
19	chr4:124472200-124474400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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