Variant report

Variant	rs6823328
Chromosome Location	chr4:119080639-119080640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119071407..119073017-chr4:119079096..119080736,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10001247	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10001520	0.83[EUR][1000 genomes]
rs10004607	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10019969	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10020944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10023656	0.83[EUR][1000 genomes]
rs10028980	0.83[EUR][1000 genomes]
rs10518291	1.00[CEU][hapmap]
rs11930405	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11931778	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11935016	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs11942654	0.91[AMR][1000 genomes]
rs11944236	1.00[AMR][1000 genomes]
rs11946833	1.00[AMR][1000 genomes]
rs11947911	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13434652	0.83[EUR][1000 genomes]
rs17049622	0.83[EUR][1000 genomes]
rs17049625	0.83[EUR][1000 genomes]
rs17049690	1.00[CEU][hapmap];0.88[GIH][hapmap];0.83[TSI][hapmap]
rs17049698	1.00[CEU][hapmap]
rs17049699	1.00[CEU][hapmap];0.88[GIH][hapmap];0.83[TSI][hapmap]
rs17049700	1.00[CEU][hapmap]
rs1829910	0.91[AMR][1000 genomes]
rs28507199	0.83[EUR][1000 genomes]
rs28536042	0.83[EUR][1000 genomes]
rs28562324	0.83[EUR][1000 genomes]
rs28665669	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28667401	0.83[EUR][1000 genomes]
rs28668316	0.83[EUR][1000 genomes]
rs28826087	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28848859	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28856120	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28882407	0.83[EUR][1000 genomes]
rs4147036	1.00[CEU][hapmap]
rs4147037	1.00[CEU][hapmap];0.88[GIH][hapmap]
rs41520948	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs4557347	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61390934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6824418	0.91[AMR][1000 genomes]
rs6842491	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6848301	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7654652	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9992747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9998199	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9998981	0.83[EUR][1000 genomes]
rs9999336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1008236	chr4:118989467-119154024	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999152	chr4:119001143-119138322	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv34038	chr4:119035124-119455391	Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119079400-119080800	Enhancers	Fetal Heart	heart
2	chr4:119079400-119082200	ZNF genes & repeats	Dnd41	blood

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