Variant report

Variant	rs6824442
Chromosome Location	chr4:8103452-8103453
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8102885..8104984-chr4:8106744..8108953,3	K562	blood:
2	chr4:8101919..8103661-chr4:8104511..8106585,2	K562	blood:
3	chr4:8102999..8104721-chr4:8104874..8107526,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11930537	1.00[EUR][1000 genomes]
rs11932159	1.00[EUR][1000 genomes]
rs16841707	1.00[EUR][1000 genomes]
rs35887263	1.00[EUR][1000 genomes]
rs57235575	1.00[EUR][1000 genomes]
rs73075919	1.00[EUR][1000 genomes]
rs73075926	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv469779	chr4:7965253-8177646	Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv482448	chr4:7965253-8177646	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv829852	chr4:7991906-8151267	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv878585	chr4:8023484-8116202	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv878586	chr4:8023484-8148159	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv878591	chr4:8063501-8207083	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv461214	chr4:8085174-8119937	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv593625	chr4:8085174-8119937	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv461215	chr4:8089598-8118561	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1010809	chr4:8097627-8292324	Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8081600-8114400	Weak transcription	Gastric	stomach
2	chr4:8084000-8104400	Weak transcription	Pancreas	Pancrea
3	chr4:8085800-8112000	Weak transcription	Brain Angular Gyrus	brain
4	chr4:8096800-8111600	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:8097800-8105200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:8098400-8109600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:8098400-8110200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:8099000-8104600	Weak transcription	Aorta	Aorta
9	chr4:8099400-8104000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:8099400-8105200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:8101200-8103600	Weak transcription	Psoas Muscle	Psoas
12	chr4:8101200-8103600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr4:8101600-8103600	Enhancers	Fetal Muscle Leg	muscle
14	chr4:8101800-8105200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:8102200-8103600	Flanking Active TSS	Hela-S3	cervix
16	chr4:8102200-8104000	Enhancers	Spleen	Spleen
17	chr4:8102600-8103600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:8102600-8103600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:8102600-8103800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:8102600-8103800	Enhancers	Left Ventricle	heart
21	chr4:8102600-8103800	Enhancers	NHEK	skin
22	chr4:8102600-8104000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:8102600-8104000	Enhancers	HMEC	breast
24	chr4:8102800-8103600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:8102800-8103600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr4:8102800-8103800	Bivalent Enhancer	Placenta	Placenta
27	chr4:8102800-8105400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr4:8103200-8103600	Weak transcription	Esophagus	oesophagus
29	chr4:8103200-8103600	Enhancers	Fetal Kidney	kidney
30	chr4:8103200-8104200	Enhancers	Fetal Brain Male	brain
31	chr4:8103200-8104600	Weak transcription	Right Ventricle	heart
32	chr4:8103400-8103600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:8103400-8103600	Bivalent Enhancer	NHDF-Ad	bronchial
34	chr4:8103400-8103800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr4:8103400-8105400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:8103400-8105800	Weak transcription	Lung	lung

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