Variant report

Variant	rs6826075
Chromosome Location	chr4:99287180-99287181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs15746	1.00[YRI][hapmap]
rs4493539	1.00[AFR][1000 genomes]
rs6827954	1.00[AFR][1000 genomes]
rs6858054	1.00[YRI][hapmap]
rs7686907	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1004616	chr4:99085875-99308901	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv879652	chr4:99125659-99303633	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv999097	chr4:99271563-99304326	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1012360	chr4:99271563-99308481	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99212400-99287800	Weak transcription	Thymus	Thymus
2	chr4:99215000-99317000	Weak transcription	Left Ventricle	heart
3	chr4:99223800-99288000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:99252400-99287400	Weak transcription	Aorta	Aorta
5	chr4:99256200-99287200	Weak transcription	Right Ventricle	heart
6	chr4:99262800-99290600	Weak transcription	NH-A	brain
7	chr4:99262800-99295600	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:99262800-99333400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:99263000-99296000	Weak transcription	Brain Angular Gyrus	brain
10	chr4:99263200-99288600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:99263800-99287200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:99264200-99338200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:99264600-99288000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:99265200-99297800	Weak transcription	Osteobl	bone
15	chr4:99265400-99287600	Weak transcription	HSMMtube	muscle
16	chr4:99265400-99298400	Weak transcription	NHDF-Ad	bronchial
17	chr4:99266200-99287400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:99271600-99314800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:99274200-99288000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr4:99274600-99290200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr4:99274800-99288200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr4:99275000-99288200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:99277200-99295400	Weak transcription	Brain Anterior Caudate	brain
24	chr4:99277400-99288200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr4:99277600-99287200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:99278400-99288200	Weak transcription	Fetal Stomach	stomach
27	chr4:99279600-99290400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr4:99279800-99287200	Weak transcription	Brain Substantia Nigra	brain
29	chr4:99280000-99298600	Weak transcription	NHLF	lung
30	chr4:99280800-99288200	Weak transcription	Gastric	stomach
31	chr4:99281800-99288000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:99282200-99288200	Weak transcription	Esophagus	oesophagus
33	chr4:99283600-99287400	Weak transcription	Lung	lung
34	chr4:99284800-99287200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:99284800-99288200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr4:99285000-99288200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr4:99285000-99337800	Weak transcription	HUVEC	blood vessel
38	chr4:99285200-99294000	Weak transcription	HMEC	breast
39	chr4:99285200-99306400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr4:99285400-99288000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:99285800-99288000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:99285800-99288400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:99285800-99288600	Strong transcription	HSMM	muscle
44	chr4:99286000-99287200	Strong transcription	Fetal Muscle Leg	muscle
45	chr4:99286000-99287200	Strong transcription	Fetal Thymus	thymus
46	chr4:99286000-99288200	Strong transcription	Primary T cells from cord blood	blood
47	chr4:99286000-99288200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:99286000-99289000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:99286000-99289000	ZNF genes & repeats	Dnd41	blood
50	chr4:99286000-99289400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood

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