Variant report

Variant	rs682610
Chromosome Location	chr3:101541639-101541640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101539582..101541974-chr3:101545076..101546641,2	K562	blood:
2	chr3:101539271..101542459-chr3:101908051..101911451,3	MCF-7	breast:
3	chr3:101529875..101542964-chr3:101564408..101571425,23	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144802	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2611840	0.82[EUR][1000 genomes]
rs2625283	0.82[EUR][1000 genomes]
rs2722162	0.82[EUR][1000 genomes]
rs605621	1.00[ASN][1000 genomes]
rs623753	1.00[ASN][1000 genomes]
rs665631	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101498800-101546200	Weak transcription	Esophagus	oesophagus
2	chr3:101504800-101546000	Weak transcription	Colonic Mucosa	Colon
3	chr3:101515400-101546000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:101516000-101546000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:101520400-101546000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:101520800-101546400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:101521200-101546200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:101528600-101546000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:101533600-101544800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:101533800-101545000	Weak transcription	Small Intestine	intestine
11	chr3:101534000-101545000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:101534000-101546000	Weak transcription	Fetal Kidney	kidney
13	chr3:101534400-101544800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:101534600-101544600	Weak transcription	Stomach Mucosa	stomach
15	chr3:101534600-101546000	Weak transcription	Fetal Intestine Large	intestine
16	chr3:101535800-101542000	Strong transcription	HSMM	muscle
17	chr3:101535800-101546200	Weak transcription	Placenta	Placenta
18	chr3:101536200-101544800	Weak transcription	NHEK	skin
19	chr3:101536400-101546000	Weak transcription	Fetal Brain Male	brain
20	chr3:101536400-101546000	Weak transcription	Psoas Muscle	Psoas
21	chr3:101536600-101544800	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:101536800-101545000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:101536800-101546600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:101537000-101546000	Weak transcription	Right Ventricle	heart
25	chr3:101539200-101545000	Weak transcription	Primary B cells from cord blood	blood
26	chr3:101539400-101542000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:101539800-101548000	Weak transcription	Hela-S3	cervix
28	chr3:101540600-101545200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr3:101540600-101546000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:101540800-101542600	Weak transcription	Thymus	Thymus
31	chr3:101540800-101543000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:101540800-101544800	Weak transcription	GM12878-XiMat	blood
33	chr3:101540800-101544800	Weak transcription	HUVEC	blood vessel
34	chr3:101540800-101545000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr3:101540800-101545200	Weak transcription	Fetal Intestine Small	intestine
36	chr3:101540800-101545200	Weak transcription	HMEC	breast
37	chr3:101540800-101546000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:101540800-101546000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:101540800-101546000	Weak transcription	Aorta	Aorta
40	chr3:101540800-101546000	Weak transcription	Brain Anterior Caudate	brain
41	chr3:101540800-101546000	Weak transcription	Fetal Stomach	stomach
42	chr3:101540800-101546000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr3:101540800-101546200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:101540800-101546200	Weak transcription	Ovary	ovary
45	chr3:101540800-101546200	Weak transcription	Pancreas	Pancrea
46	chr3:101540800-101546400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:101540800-101546400	Weak transcription	Lung	lung
48	chr3:101540800-101546400	Weak transcription	Spleen	Spleen
49	chr3:101540800-101546600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr3:101541000-101543400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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